Compact overview of VAR_016502 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
UniProt ID | Gene | Mutation | Mutation type | Disease | OMIM | dbSNP | |||||||
1B08_HUMAN | HLA-B | N87D | Polymorphism | - | No OMIM entry | rs1050570 |
Short stretch summary of VAR_016502 | ||||
---|---|---|---|---|
Predictor | Predicted regions overview | Comparison to WT | Stretches in variant | Stretches in WT |
Tango | 0 No change | 5 | 5 | |
Waltz | -5 No change | 1 | 1 | |
Limbo | 0 No change | 5 | 5 | |
Domain composition of 1B08_HUMAN | ||||
Database | Domain composition | Residue details | ||
PFAM | MHC_I (Residues 25-203), C1-set (Residues 210-295), MHC_I_C (Residues 336-362) | |||
SMART | IGc1 (Residues 222-293) |
Structure stability summary of VAR_016502 | ||||
---|---|---|---|---|
Variant | Stability change | Effect | Structure | Stability frequency histogram |
N87D | 1.36 kcal/mol | Reduced stability |
TANGO aggregation
Graphical comparison of TANGO regions in variant and wild type | |||
---|---|---|---|
Protein | Predicted regions overview | TANGO regions | Total score |
Variant | 5 | 3132 | |
Wild type | 5 | 3132 |
TANGO regions in wild type and variant | |||||
---|---|---|---|---|---|
Wild type TANGO regions | |||||
N-term gatekeepers | TANGO region | C-term gatekeepers | Start | End | Score |
VMAPR | TVLLLLSAALALT | ETWAG | 8 | 20 | 87 |
RGEPR | FISVGYV | DDTQF | 46 | 52 | 36 |
FYPAE | ITLTW | QRDGE | 237 | 241 | 13 |
RTFQK | WAAVV | VPSGE | 268 | 272 | 10 |
QSTVP | IVGIVAGLAVLAVVVIGAVVAAVM | CRRKS | 308 | 331 | 68 |
Variant protein TANGO regions | |||||
N-term gatekeepers | TANGO region | C-term gatekeepers | Start | End | Score |
VMAPR | TVLLLLSAALALT | ETWAG | 8 | 20 | 87 |
RGEPR | FISVGYV | DDTQF | 46 | 52 | 36 |
FYPAE | ITLTW | QRDGE | 237 | 241 | 13 |
RTFQK | WAAVV | VPSGE | 268 | 272 | 10 |
QSTVP | IVGIVAGLAVLAVVVIGAVVAAVM | CRRKS | 308 | 331 | 68 |
Difference in TANGO aggregation between wild type and variant | |
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This graph plots the per-residue TANGO aggregation score difference between the wild type protein and this variant. |
TANGO aggregation profile score plot | |
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This graph plots the per-residue TANGO aggregation score of the variant protein. From left to right, all residue scores from the N-terminus to the C-terminus are plotted |
WALTZ amylogenicity
Graphical comparison of WALTZ regions in variant and wild type | |||
---|---|---|---|
Protein | Predicted regions overview | WALTZ regions | Total score |
Variant | 1 | 257 | |
Wild type | 1 | 262 |
WALTZ regions in wild type and variant | |||||
---|---|---|---|---|---|
Wild type WALTZ regions | |||||
N-term gatekeepers | WALTZ region | C-term gatekeepers | Start | End | Score |
LLRGH | NQYAYD | GKDYI | 138 | 143 | 40 |
Variant protein WALTZ regions | |||||
N-term gatekeepers | WALTZ region | C-term gatekeepers | Start | End | Score |
LLRGH | NQYAYD | GKDYI | 138 | 143 | 40 |
Difference in WALTZ amylogenicity between wild type and variant | |
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This graph plots the per-residue WALTZ amylogenic score difference between the wild type protein and this variant. |
WALTZ amylogenic profile score plot | |
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This graph plots the per-residue WALTZ amylogenic score of the variant protein. From left to right, all residue scores from the N-terminus to the C-terminus are plotted |
LIMBO chaperone binding
Graphical comparison of LIMBO regions in variant and wild type | |||
---|---|---|---|
Protein | Predicted regions overview | LIMBO regions | Total score |
Variant | 5 | 2867 | |
Wild type | 5 | 2867 |
LIMBO regions in wild type and variant | |||||
---|---|---|---|---|---|
Wild type LIMBO regions | |||||
N-term gatekeepers | WALTZ region | C-term gatekeepers | Start | End | Score |
MAPRT | VLLLLSAA | LALTE | 9 | 16 | 99 |
DRNTQ | IFKTNT | QTDRE | 90 | 95 | 34 |
TCVEW | LRRYLENG | KDTLE | 192 | 199 | 87 |
FYPAE | ITLTWQRD | GEDQT | 237 | 244 | 46 |
GLPKP | LTLRWEPS | SQSTV | 294 | 301 | 100 |
Variant protein LIMBO regions | |||||
N-term gatekeepers | WALTZ region | C-term gatekeepers | Start | End | Score |
MAPRT | VLLLLSAA | LALTE | 9 | 16 | 99 |
DRDTQ | IFKTNT | QTDRE | 90 | 95 | 34 |
TCVEW | LRRYLENG | KDTLE | 192 | 199 | 87 |
FYPAE | ITLTWQRD | GEDQT | 237 | 244 | 46 |
GLPKP | LTLRWEPS | SQSTV | 294 | 301 | 100 |
Difference in LIMBO chaperone binding between wild type and variant | |
---|---|
This graph plots the per-residue LIMBO chaperone binding difference between the wild type protein and this variant. |
LIMBO chaperone binding score plot | |
---|---|
This graph plots the per-residue LIMBO chaperone binding score of the variant protein. From left to right, all residue scores from the N-terminus to the C-terminus are plotted |
FOLDX structural profile
Functional sites, structural features and cellular processing
Functional sites and structural features | |
---|---|
Feature | This residue |
Catalytic site | No |
Secondary structure | HELIX |
Transmembrane topology | outside |
Cellular processing | |
---|---|
Feature | Affected by variant |
Signal peptide | No |
Farnesylation anchor | No |
N-Myristoylation anchor | No |
Geranylgeranyl transferase Type 1 anchor | No |
Geranylgeranyl transferase Type 2 anchor | No |
Glycosylphosphatidylinositol (GPI) anchor | No |
Peroxisomal targeting signal PTS1 | No |
Subcellular location | No |
All mutations from 1B08_HUMAN
27 mutations listed
Variant | UniProt ID | Mutation | Disease | Mutation Type | dTANGO | dWALTZ | dLIMBO | ddG |
---|---|---|---|---|---|---|---|---|
VAR_061396 | 1B08_HUMAN | C349Y | - | Polymorphism | 0 | 27 | 0 | N.A. |
VAR_061394 | 1B08_HUMAN | S48T | - | Polymorphism | 247 | 0 | 0 | 0.48 |
VAR_061395 | 1B08_HUMAN | C349S | - | Polymorphism | 0 | 0 | 0 | N.A. |
VAR_061393 | 1B08_HUMAN | S48P | - | Polymorphism | -253 | 0 | 0 | 4.6 |
VAR_061392 | 1B08_HUMAN | S48A | - | Polymorphism | 288 | 0 | 0 | 1.15 |
VAR_059475 | 1B08_HUMAN | D98Y | - | Polymorphism | 0 | 1 | 0 | -4.22 |
VAR_059474 | 1B08_HUMAN | N87K | - | Polymorphism | 1 | -4 | 468 | -0.16 |
VAR_056328 | 1B08_HUMAN | V306I | - | Polymorphism | 0 | 0 | 0 | N.A. |
VAR_056329 | 1B08_HUMAN | A329T | - | Polymorphism | 3 | 0 | 0 | N.A. |
VAR_056326 | 1B08_HUMAN | H137Y | - | Polymorphism | 0 | 0 | -192 | -0.72 |
VAR_056327 | 1B08_HUMAN | R155S | - | Polymorphism | -1 | 0 | 7 | 0.6 |
VAR_056325 | 1B08_HUMAN | T97A | - | Polymorphism | 0 | 0 | 0 | -0.14 |
VAR_056321 | 1B08_HUMAN | M4T | - | Polymorphism | 0 | 0 | 0 | N.A. |
VAR_056324 | 1B08_HUMAN | A65T | - | Polymorphism | 0 | 0 | 0 | N.A. |
VAR_056323 | 1B08_HUMAN | L17V | - | Polymorphism | 20 | 0 | 0 | N.A. |
VAR_016520 | 1B08_HUMAN | Y140D | - | Polymorphism | 0 | -239 | 0 | 4.93 |
VAR_056322 | 1B08_HUMAN | V9L | - | Polymorphism | -16 | 0 | 0 | N.A. |
VAR_016510 | 1B08_HUMAN | D180L | - | Polymorphism | 0 | 0 | 0 | -1.91 |
VAR_016511 | 1B08_HUMAN | D180R | - | Polymorphism | 1 | 0 | 0 | -0.81 |
VAR_016508 | 1B08_HUMAN | N138D | - | Polymorphism | 0 | -208 | 117 | 2.42 |
VAR_016509 | 1B08_HUMAN | V176E | - | Polymorphism | 0 | 0 | 0 | 1.53 |
VAR_016506 | 1B08_HUMAN | S121R | - | Polymorphism | 1 | -1 | -138 | -2.41 |
VAR_016507 | 1B08_HUMAN | S121T | - | Polymorphism | 0 | -1 | -173 | 0.08 |
VAR_016503 | 1B08_HUMAN | F91S | - | Polymorphism | 0 | -6 | -204 | 3.63 |
VAR_016504 | 1B08_HUMAN | S101N | - | Polymorphism | 0 | 0 | -153 | -0.58 |